importing and trimming reads




Mapping to Sigenae 8


CSV export (raw)
solid0078_20091105_RbbertsLab_GE_F3 trimmed mapping (67701 references).csv

Going with 1x V coverage and 60% Horizontal cov
and length of consensus > 100

= 7979 genes
oshv_siglist.csv




-
Enrichment analysis

note 82312 sequences in Sig 8

Best Hit 
Sig8_best.tsv.gz



JOIN siglist ^ to full Sigenae Best Hit list to IDs for DAVID

Galaxy35-[Join_two_Datasets_on_data_32_and_data_33].tabular



uploading background (best hits)



DAVID FILES

chart_6B73E49A48191330099476549.txt










chart_6B73E49A48191330099597327.txt


chart_6B73E49A48191330099642101.txt


chart_6B73E49A48191330099713091.txt





taking unmapped reads and mapping to OSHV (NC_005881)





Taking left-overs and de novo



blasting on SP
Multi BLAST (186 sequences).csv